Any software will do, as long as it allows you to edit layers and color channels.
To make a 3D model from photos, you need to think about panorama imaging.
How to create 3D model from photos in 7 steps?
Method 2 Method 2 of 2: Using Free 3D Photo Maker Download Article
# It will search for all possible *.Frequently Asked Questions How do I create a 3D image? # This function converts chemdraw structures to mol2 files. "obabel." converts the smiles string to a mol2 file with a "-ismi" flag to input the smiles fileĬongrats! You should now be able to convert SMILES strings to 3D geometries!Ĭode to convert *.cdx files to *.mol2 files in a for-loop fashion: "echo." creates a file with the SMILES as the first line Obabel -ismi smiles2mol_example_smiles_2.smi -omol2 -h -gen3d > smiles2mol_example_smiles_2.mol2 " -gen3d" means to search for 3d conformers (see link: )Īlternatively, if you have the SMILES in a fileĮcho " SCCCCCCCCCCCO " > smiles2mol_example_smiles_2.smi Obabel -:" SCCCCCCCCCCCO " -omol2 -h -gen3d > smiles2mol_example_smiles_1. Step 2.1.1: Run the following command to generate the *.mol2 file Step 2.1.0: Open terminal with openbabel installed. Feel free to use Avogadro to visualize the different structures and compare them. For simplicity, you could use gen3d for a quick transformation. The alternative method produces similar results to obminimize. " -gen3d" means to search for 3d conformers Obabel -icdx example_structure.cdx -omol2 -h -gen3d > example_structure_gen3d.mol2 Now, you should have successfully converted a ChemDraw structure into a 3D structure!Īlternative one step command (using gen3d):
"> example_structure_minimized.mol2" means to redirect output to a mol2 file "-n 50000" means 50,000 minimization steps have been performed "-c 1e-6" means to run minimization until tolerance of 1e-6 difference is reached, OR "-ff MMFF94s" means to run the MMFF94s force field "-sd" means to energy minimize with steepest descent How To Make 2D Logo Into 3D Logo How To Convert 2D Logo Into 3D Logo In Blender TutorialHello Free Fire Lover Follow Me On Instagram. Obminimize -sd -ff MMFF94s -c 1e-6 -n 50000 -o "mol2" example_structure.mol2 > example_structure_minimized.mol2 mol2 file is not energy minimized, so run the following to minimize structure Side note: I tried ".cdxml" as an input ChemDraw, but it does not correctly convert to. "> example_structure.mol2" means to redirect output to. Obabel -icdx example_structure.cdx -omol2 -h > example_structure.mol2 Step 2.0.1: Run obabel and convert into mol2 file: Step 2.0.0: Open terminal with openbabel installed and go into the directory where your *.cdx is stored. mol2 structures)Įxample_structure.cdx: ChemDraw example used in this tutorial Output_files: Output files from this tutorial (e.g. Images: Directory containing all images for this tutorial bashrc commands to take into effectĬhemDraw : Used for drawing 2D structuresĪvogadro : Used for visualizing 3D structuresĪll input/output files are downloadable through GitLab. Store in the server, then run: bash babel_install_code.shĪfter running the code, make sure to add 'export PATH="$/local_install/openbabel-2.4.1/bin:$PATH"' into your ~/.bashrc
Open terminal and run: brew install open-babel Openbabel Version 2.4.1 : Main workhorse for converting representations OpenFOAM by default only works with 3D mesh elements, so some special steps need to be applied to create a 2D mesh.
On Mac: Command + space, type in "Terminal" and hit enter This tutorial was created to show how to generate a 2D mesh for OpenFOAM using the GMSH Open Source Mesh Generator.
Bash terminal: Main language used to run code